Osativa LOC Os10g32405

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Osativa_LOC_Os10g32405
[ LOC_Os10g32405]
Chr10 16990228 16992239 v7 Oryza sativa (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Osativa_LOC_Os10g32405.1
LOC_Os10g32405.1
Low No 2012 OG0271696
Coding potential...
Type: noncoding Potential: -0.859
Folding energies...
MFEI: -28.762 AMFE: -0.691
GC content
%: 41.600


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Osativa_LOC_Os10g32405.1  RepBase (RepeatMasker) 2014-01-31 DNA/PIF-Harbinger; DNA/TcMar-Stowaway


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Osativa_LOC_Os10g32405.png