Othomaeum Oropetium 20150105 00133

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Othomaeum_Oropetium_20150105_00133
[ Oropetium_20150105_00133]
Oropetium_genomic_20141112_001 711120 712912 v1 Oropetium thomaeum (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Othomaeum_Oropetium_20150105_00133A
Oropetium_20150105_00133A
High No 297 OG0236049
Coding potential...
Type: noncoding Potential: -0.604
Folding energies...
MFEI: -29.461 AMFE: -0.561
GC content
%: 52.525


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Othomaeum_Oropetium_20150105_00133.png