Othomaeum Oropetium 20150105 00170

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Othomaeum_Oropetium_20150105_00170
[ Oropetium_20150105_00170]
Oropetium_genomic_20141112_001 899473 899703 v1 Oropetium thomaeum (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Othomaeum_Oropetium_20150105_00170A
Oropetium_20150105_00170A
High No 231 OG0236057
Coding potential...
Type: noncoding Potential: -0.808
Folding energies...
MFEI: -44.632 AMFE: -0.665
GC content
%: 67.100


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Othomaeum_Oropetium_20150105_00170.png