Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Othomaeum_Oropetium_20150105_00447 [ Oropetium_20150105_00447] |
Oropetium_genomic_20141112_001 | 2394697 | 2395505 | v1 | Oropetium thomaeum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Othomaeum_Oropetium_20150105_00447A Oropetium_20150105_00447A |
Low | No | 706 | OG0236086 | Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -40.283 AMFE: -0.672 GC content %: 59.915 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Othomaeum_Oropetium_20150105_00447A | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger |