Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Othomaeum_Oropetium_20150105_02049 [ Oropetium_20150105_02049] |
Oropetium_genomic_20141112_002 | 3827054 | 3827807 | v1 | Oropetium thomaeum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Othomaeum_Oropetium_20150105_02049A Oropetium_20150105_02049A |
Low | No | 222 | OG0236261 | Get ORF Coding potential... Type: noncoding Potential: -0.599 Folding energies... MFEI: -40.676 AMFE: -0.631 GC content %: 64.414 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Othomaeum_Oropetium_20150105_02049A | SwissProt | 2021-04-01 | Q5JNJ5 | 8.7e-4 |