Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Othomaeum_Oropetium_20150105_03957 [ Oropetium_20150105_03957] |
Oropetium_genomic_20141112_010 | 3371373 | 3372007 | v1 | Oropetium thomaeum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Othomaeum_Oropetium_20150105_03957A Oropetium_20150105_03957A |
Low | No | 349 | OG0236524 | Get ORF Coding potential... Type: noncoding Potential: -0.139 Folding energies... MFEI: -29.140 AMFE: -0.628 GC content %: 46.418 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Othomaeum_Oropetium_20150105_03957A | SwissProt | 2021-04-01 | F4HQ05 | 8.27e-24 |