Othomaeum Oropetium 20150105 19461

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Othomaeum_Oropetium_20150105_19461
[ Oropetium_20150105_19461]
Oropetium_genomic_20141112_066 427818 428790 v1 Oropetium thomaeum (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Othomaeum_Oropetium_20150105_19461A
Oropetium_20150105_19461A
High No 792 OG0238612
Coding potential...
Type: noncoding Potential: -0.914
Folding energies...
MFEI: -35.859 AMFE: -0.703
GC content
%: 51.010


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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