Othomaeum Oropetium 20150105 22404

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Othomaeum_Oropetium_20150105_22404
[ Oropetium_20150105_22404]
Oropetium_genomic_20141112_081 109001 112081 v1 Oropetium thomaeum (Phytozome 13)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Othomaeum_Oropetium_20150105_22404A
Oropetium_20150105_22404A
High No 1251 OG0239022
Coding potential...
Type: noncoding Potential: -1.040
Folding energies...
MFEI: -30.224 AMFE: -0.643
GC content
%: 47.002


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Othomaeum_Oropetium_20150105_22404.png