Othomaeum Oropetium 20150105 23668

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Othomaeum_Oropetium_20150105_23668
[ Oropetium_20150105_23668]
Oropetium_genomic_20141112_100 161889 162245 v1 Oropetium thomaeum (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Othomaeum_Oropetium_20150105_23668A
Oropetium_20150105_23668A
Low No 357 OG0239222
Coding potential...
Type: noncoding Potential: -0.189
Folding energies...
MFEI: -49.244 AMFE: -0.703
GC content
%: 70.028


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Othomaeum_Oropetium_20150105_23668A  RepBase (RepeatMasker) 2014-01-31 LTR/Gypsy


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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