Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Othomaeum_Oropetium_20150105_23695 [ Oropetium_20150105_23695] |
Oropetium_genomic_20141112_100 | 276695 | 277009 | v1 | Oropetium thomaeum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Othomaeum_Oropetium_20150105_23695A Oropetium_20150105_23695A |
Low | No | 225 | OG0239226 | Get ORF Coding potential... Type: noncoding Potential: -0.639 Folding energies... MFEI: -48.578 AMFE: -0.662 GC content %: 73.333 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Othomaeum_Oropetium_20150105_23695A | SwissProt | 2021-04-01 | Q9LNX4 | 3.34e-8 |