Pavium Pav co3989921.1 g010.1.br

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Pavium_Pav_co3989921.1_g010.1.br
[ Pav_co3989921.1_g010.1.br]
Pav_co3989921.1. 397 999 r1 Prunus avium (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Pavium_Pav_co3989921.1_g010.1.br:mrna
Pav_co3989921.1_g010.1.br:mrna
High No 245 [1]
Coding potential...
Type: noncoding Potential: -1.247
Folding energies...
MFEI: -27.633 AMFE: -0.505
GC content
%: 54.694


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Pavium_Pav_co3989921.1_g010.1.br.png