Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Pavium_Pav_sc0001553.1_g120.1.br [ Pav_sc0001553.1_g120.1.br] |
Pav_sc0001553.1. | 53841 | 54254 | r1 | Prunus avium (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Pavium_Pav_sc0001553.1_g120.1.br:mrna Pav_sc0001553.1_g120.1.br:mrna |
Low | No | 249 | [1] | Get ORF Coding potential... Type: noncoding Potential: -0.640 Folding energies... MFEI: -23.976 AMFE: -0.519 GC content %: 46.185 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Pavium_Pav_sc0001553.1_g120.1.br:mrna | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |