Pavium Pav sc0002524.1 g110.1.mk

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Pavium_Pav_sc0002524.1_g110.1.mk
[ Pav_sc0002524.1_g110.1.mk]
Pav_sc0002524.1. 58327 58757 r1 Prunus avium (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Pavium_Pav_sc0002524.1_g110.1.mk:mrna
Pav_sc0002524.1_g110.1.mk:mrna
High No 347 [1]
Coding potential...
Type: noncoding Potential: -0.518
Folding energies...
MFEI: -27.118 AMFE: -0.663
GC content
%: 40.922


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Pavium_Pav_sc0002524.1_g110.1.mk.png