Pdulcis Prudul26B018559
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Pdulcis_Prudul26B018559 [ Prudul26B018559] |
pdulcis26_s0001 | 2054387 | 2057862 | v2 | Prunus dulcis (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Pdulcis_VVA09716 VVA09716 |
High | No | 297 | OG0057236 | Get ORF Coding potential... Type: noncoding Potential: -0.425 Folding energies... MFEI: -27.946 AMFE: -0.606 GC content %: 46.128 | |
| Pdulcis_VVA09717 VVA09717 |
High | No | 216 | OG0057236 | Get ORF Coding potential... Type: noncoding Potential: -0.483 Folding energies... MFEI: -24.167 AMFE: -0.533 GC content %: 45.370 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
