Pdulcis Prudul26B025031
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Pdulcis_Prudul26B025031 [ Prudul26B025031] |
pdulcis26_s0092 | 487703 | 489771 | v2 | Prunus dulcis (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Pdulcis_VVA25337 VVA25337 |
High | No | 1400 | OG0021382 | Get ORF Coding potential... Type: noncoding Potential: -0.397 Folding energies... MFEI: -24.721 AMFE: -0.633 GC content %: 39.071 | |
| Pdulcis_VVA25338 VVA25338 |
High | No | 984 | OG0021382 | Get ORF Coding potential... Type: noncoding Potential: -0.317 Folding energies... MFEI: -21.758 AMFE: -0.591 GC content %: 36.789 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
