GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Pdulcis_Prudul26B028450 [ Prudul26B028450]	pdulcis26_s0260	103993	105091	v2	Prunus dulcis (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Pdulcis_VVA32755 VVA32755	High	No	683	OG0057036		Get ORF Coding potential... Type: noncoding Potential: -0.258 Folding energies... MFEI: -21.889 AMFE: -0.560 GC content %: 39.092
Pdulcis_VVA32756 VVA32756	High	No	434	OG0301149		Get ORF Coding potential... Type: noncoding Potential: -0.126 Folding energies... MFEI: -24.147 AMFE: -0.624 GC content %: 38.710

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).