GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Phallii_Pahal.1G087900 [ Pahal.1G087900]	Chr01	6080668	6081566	v3.2	Panicum hallii (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Phallii_Pahal.1G087900.1 Pahal.1G087900.1	High	No	315	OG0055568		Get ORF Coding potential... Type: noncoding Potential: -0.620 Folding energies... MFEI: -33.492 AMFE: -0.510 GC content %: 65.714
Phallii_Pahal.1G087900.2 Pahal.1G087900.2	High	No	756	OG0055568		Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -34.312 AMFE: -0.621 GC content %: 55.291

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).