Psomniferum C5167 000120

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Psomniferum_C5167_000120
[ C5167_000120]
9 1227962 1232031 v1 Papaver somniferum (Ensembl Plants 51)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Psomniferum_RZC75767
RZC75767
Low No 3394 OG0286823
Coding potential...
Type: noncoding Potential: -1.160
Folding energies...
MFEI: -22.973 AMFE: -0.662
GC content
%: 34.679


Matches to external databases
Help.png

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Psomniferum_RZC75767  SwissProt 2021-04-01 Q941T1 2.19e-6


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Psomniferum_C5167_000120.png