GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Ptrifoliata_Ptrif.0001s0769 [ Ptrif.0001s0769]	scaffold_1	6097306	6131748	v1.3.1	Poncirus trifoliata (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Ptrifoliata_Ptrif.0001s0769.1 Ptrif.0001s0769.1	High	No	777	OG0021340		Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -27.027 AMFE: -0.574 GC content %: 47.104
Ptrifoliata_Ptrif.0001s0769.2 Ptrif.0001s0769.2	High	No	628	OG0021340		Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -24.459 AMFE: -0.614 GC content %: 39.809
Ptrifoliata_Ptrif.0001s0769.3 Ptrif.0001s0769.3	High	No	880	OG0021340		Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -26.773 AMFE: -0.677 GC content %: 39.545

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).