Pumbilicalis Pum0014s0007

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Pumbilicalis_Pum0014s0007
[ Pum0014s0007]
scaffold_14 158302 158649 v4.1 Porphyra umbilicalis (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Pumbilicalis_Pum0014s0007.1
Pum0014s0007.1
High No 348 OG0290342
Coding potential...
Type: noncoding Potential: -0.332
Folding energies...
MFEI: -60.517 AMFE: -0.783
GC content
%: 77.299


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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