Pvera EVM0001179

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Pvera_EVM0001179
[ EVM0001179]
Contig848 297464 298638 v2 Pistacia vera (Ensembl Plants 51)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Pvera_EVM0001179.1
EVM0001179.1
Low No 345 OG0287869
Coding potential...
Type: noncoding Potential: -0.245
Folding energies...
MFEI: -23.420 AMFE: -0.561
GC content
%: 41.739


Matches to external databases
Help.png

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Pvera_EVM0001179.1  RepBase (RepeatMasker) 2014-01-31 LTR/Gypsy


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Pvera_EVM0001179.png