GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Pvirgatum_Pavir.1KG050708 [ Pavir.1KG050708]	Chr01K	4113474	4114403	v5.1	Panicum virgatum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Pvirgatum_Pavir.1KG050708.1 Pavir.1KG050708.1	High	No	758	OG0009049		Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -26.464 AMFE: -0.602 GC content %: 43.931
Pvirgatum_Pavir.1KG050708.2 Pavir.1KG050708.2	High	No	747	OG0009049		Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -26.305 AMFE: -0.599 GC content %: 43.909
Pvirgatum_Pavir.1KG050708.3 Pavir.1KG050708.3	High	No	719	OG0009049		Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -26.175 AMFE: -0.599 GC content %: 43.672
Pvirgatum_Pavir.1KG050708.4 Pavir.1KG050708.4	High	No	708	OG0009049		Get ORF Coding potential... Type: noncoding Potential: -1.240 Folding energies... MFEI: -25.621 AMFE: -0.587 GC content %: 43.644

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).