GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Pvirgatum_Pavir.1KG196805 [ Pavir.1KG196805]	Chr01K	16601660	16603984	v5.1	Panicum virgatum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Pvirgatum_Pavir.1KG196805.1 Pavir.1KG196805.1	High	No	1264	OG0055766		Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -39.454 AMFE: -0.723 GC content %: 54.589
Pvirgatum_Pavir.1KG196805.2 Pavir.1KG196805.2	High	No	718	OG0055766		Get ORF Coding potential... Type: noncoding Potential: -1.445 Folding energies... MFEI: -39.875 AMFE: -0.680 GC content %: 58.635

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).