Pvirgatum Pavir.1KG356405

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Pvirgatum_Pavir.1KG356405
[ Pavir.1KG356405]
Chr01K 39230335 39232909 v5.1 Panicum virgatum (Phytozome 13)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Pvirgatum_Pavir.1KG356405.1
Pavir.1KG356405.1
High No 1077 OG0021169
Coding potential...
Type: noncoding Potential: -1.056
Folding energies...
MFEI: -27.688 AMFE: -0.525
GC content
%: 52.739
Pvirgatum_Pavir.1KG356405.2
Pavir.1KG356405.2
High No 940 OG0021169
Coding potential...
Type: noncoding Potential: -1.022
Folding energies...
MFEI: -31.415 AMFE: -0.567
GC content
%: 55.426


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Pvirgatum_Pavir.1KG356405.png