Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Pvirgatum_Pavir.1NG462857 [ Pavir.1NG462857] |
Chr01N | 29541477 | 29547802 | v5.1 | Panicum virgatum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Pvirgatum_Pavir.1NG462857.1 Pavir.1NG462857.1 |
High | No | 1263 | OG0006368 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -23.476 AMFE: -0.560 GC content %: 41.884 | |
Pvirgatum_Pavir.1NG462857.2 Pavir.1NG462857.2 |
High | No | 342 | OG0006368 | Get ORF Coding potential... Type: noncoding Potential: -1.437 Folding energies... MFEI: -23.889 AMFE: -0.552 GC content %: 43.275 | |
Pvirgatum_Pavir.1NG462857.3 Pavir.1NG462857.3 |
High | No | 339 | OG0006368 | Get ORF Coding potential... Type: noncoding Potential: -1.436 Folding energies... MFEI: -23.599 AMFE: -0.548 GC content %: 43.068 | |
Pvirgatum_Pavir.1NG462857.4 Pavir.1NG462857.4 |
High | No | 1260 | OG0006368 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -23.373 AMFE: -0.559 GC content %: 41.825 | |
Pvirgatum_Pavir.1NG462857.5 Pavir.1NG462857.5 |
High | No | 1189 | OG0006368 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -22.977 AMFE: -0.585 GC content %: 39.277 | |
Pvirgatum_Pavir.1NG462857.6 Pavir.1NG462857.6 |
High | No | 1186 | OG0006368 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -22.884 AMFE: -0.584 GC content %: 39.207 |