GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Pvirgatum_Pavir.2KG212591 [ Pavir.2KG212591]	Chr02K	39139758	39141196	v5.1	Panicum virgatum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Pvirgatum_Pavir.2KG212591.1 Pavir.2KG212591.1	High	No	543	OG0055836		Get ORF Coding potential... Type: noncoding Potential: -0.842 Folding energies... MFEI: -26.059 AMFE: -0.607 GC content %: 42.910
Pvirgatum_Pavir.2KG212591.2 Pavir.2KG212591.2	High	No	795	OG0276356		Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -22.855 AMFE: -0.647 GC content %: 35.346
Pvirgatum_Pavir.2KG212591.3 Pavir.2KG212591.3	High	No	565	OG0055836		Get ORF Coding potential... Type: noncoding Potential: -0.943 Folding energies... MFEI: -26.779 AMFE: -0.630 GC content %: 42.478

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).