Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Pvirgatum_Pavir.2NG493900 [ Pavir.2NG493900] |
Chr02N | 57970227 | 57971348 | v5.1 | Panicum virgatum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Pvirgatum_Pavir.2NG493900.2 Pavir.2NG493900.2 |
Low | No | 769 | OG0021204 | Get ORF Coding potential... Type: noncoding Potential: -0.906 Folding energies... MFEI: -24.824 AMFE: -0.612 GC content %: 40.572 | |
Pvirgatum_Pavir.2NG493900.3 Pavir.2NG493900.3 |
High | No | 643 | OG0021204 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -25.599 AMFE: -0.596 GC content %: 42.924 | |
Pvirgatum_Pavir.2NG493900.4 Pavir.2NG493900.4 |
Low | No | 757 | OG0021204 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -24.544 AMFE: -0.611 GC content %: 40.159 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Pvirgatum_Pavir.2NG493900.2 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
Pvirgatum_Pavir.2NG493900.4 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron |