Pvirgatum Pavir.2NG520100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Pvirgatum_Pavir.2NG520100 [ Pavir.2NG520100] |
Chr02N | 60725542 | 60727553 | v5.1 | Panicum virgatum (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Pvirgatum_Pavir.2NG520100.3 Pavir.2NG520100.3 |
High | No | 1089 | OG0009052 | Get ORF Coding potential... Type: noncoding Potential: -0.744 Folding energies... MFEI: -30.964 AMFE: -0.722 GC content %: 42.883 | |
| Pvirgatum_Pavir.2NG520100.4 Pavir.2NG520100.4 |
High | No | 1149 | OG0009052 | Get ORF Coding potential... Type: noncoding Potential: -0.680 Folding energies... MFEI: -30.200 AMFE: -0.721 GC content %: 41.862 | |
| Pvirgatum_Pavir.2NG520100.5 Pavir.2NG520100.5 |
High | No | 1030 | OG0009052 | Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -31.806 AMFE: -0.740 GC content %: 43.010 | |
| Pvirgatum_Pavir.2NG520100.6 Pavir.2NG520100.6 |
High | No | 1085 | OG0009052 | Get ORF Coding potential... Type: noncoding Potential: -0.733 Folding energies... MFEI: -30.839 AMFE: -0.720 GC content %: 42.857 | |
| Pvirgatum_Pavir.2NG520100.7 Pavir.2NG520100.7 |
High | No | 1145 | OG0009052 | Get ORF Coding potential... Type: noncoding Potential: -0.669 Folding energies... MFEI: -29.930 AMFE: -0.715 GC content %: 41.834 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
