Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Pvirgatum_Pavir.3KG252300 [ Pavir.3KG252300] |
Chr03K | 36010818 | 36012429 | v5.1 | Panicum virgatum (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Pvirgatum_Pavir.3KG252300.4 Pavir.3KG252300.4 |
High | No | 1144 | OG0014256 | Get ORF Coding potential... Type: noncoding Potential: -0.567 Folding energies... MFEI: -37.701 AMFE: -0.656 GC content %: 57.430 | |
Pvirgatum_Pavir.3KG252300.5 Pavir.3KG252300.5 |
High | No | 1223 | OG0014256 | Get ORF Coding potential... Type: noncoding Potential: -0.583 Folding energies... MFEI: -36.419 AMFE: -0.646 GC content %: 56.337 | |
Pvirgatum_Pavir.3KG252300.6 Pavir.3KG252300.6 |
High | No | 1248 | OG0014256 | Get ORF Coding potential... Type: noncoding Potential: -0.559 Folding energies... MFEI: -36.410 AMFE: -0.654 GC content %: 55.689 | |
Pvirgatum_Pavir.3KG252300.7 Pavir.3KG252300.7 |
High | No | 1327 | OG0014256 | Get ORF Coding potential... Type: noncoding Potential: -0.572 Folding energies... MFEI: -35.328 AMFE: -0.645 GC content %: 54.785 |