Pvirgatum Pavir.3KG439100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Pvirgatum_Pavir.3KG439100 [ Pavir.3KG439100] |
Chr03K | 54888682 | 54891196 | v5.1 | Panicum virgatum (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Pvirgatum_Pavir.3KG439100.2 Pavir.3KG439100.2 |
High | No | 785 | OG0004364 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -25.299 AMFE: -0.625 GC content %: 40.510 | |
| Pvirgatum_Pavir.3KG439100.3 Pavir.3KG439100.3 |
High | No | 688 | OG0004364 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -25.044 AMFE: -0.613 GC content %: 40.843 | |
| Pvirgatum_Pavir.3KG439100.4 Pavir.3KG439100.4 |
High | No | 595 | OG0004364 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -23.697 AMFE: -0.555 GC content %: 42.689 | |
| Pvirgatum_Pavir.3KG439100.5 Pavir.3KG439100.5 |
High | No | 510 | OG0004364 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -23.078 AMFE: -0.540 GC content %: 42.745 | |
| Pvirgatum_Pavir.3KG439100.6 Pavir.3KG439100.6 |
High | No | 504 | OG0004364 | Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -24.246 AMFE: -0.605 GC content %: 40.079 | |
| Pvirgatum_Pavir.3KG439100.7 Pavir.3KG439100.7 |
High | No | 607 | OG0004364 | Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -24.217 AMFE: -0.576 GC content %: 42.010 | |
| Pvirgatum_Pavir.3KG439100.8 Pavir.3KG439100.8 |
High | No | 692 | OG0004364 | Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -24.480 AMFE: -0.582 GC content %: 42.052 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
