GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Pvirgatum_Pavir.3NG194300 [ Pavir.3NG194300]	Chr03N	54392607	54396309	v5.1	Panicum virgatum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Pvirgatum_Pavir.3NG194300.3 Pavir.3NG194300.3	High	No	1036	OG0055959		Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -34.044 AMFE: -0.684 GC content %: 49.807
Pvirgatum_Pavir.3NG194300.4 Pavir.3NG194300.4	High	No	988	OG0055959		Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -35.111 AMFE: -0.695 GC content %: 50.506

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).