Pvirgatum Pavir.3NG249000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Pvirgatum_Pavir.3NG249000 [ Pavir.3NG249000] |
Chr03N | 59968499 | 59971143 | v5.1 | Panicum virgatum (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Pvirgatum_Pavir.3NG249000.10 Pavir.3NG249000.10 |
High | No | 1086 | OG0002211 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -34.171 AMFE: -0.638 GC content %: 53.591 | |
| Pvirgatum_Pavir.3NG249000.11 Pavir.3NG249000.11 |
High | No | 994 | OG0002211 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -33.793 AMFE: -0.624 GC content %: 54.125 | |
| Pvirgatum_Pavir.3NG249000.12 Pavir.3NG249000.12 |
High | No | 1090 | OG0002211 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -34.037 AMFE: -0.635 GC content %: 53.578 | |
| Pvirgatum_Pavir.3NG249000.13 Pavir.3NG249000.13 |
High | No | 998 | OG0002211 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -33.647 AMFE: -0.622 GC content %: 54.108 | |
| Pvirgatum_Pavir.3NG249000.14 Pavir.3NG249000.14 |
High | No | 333 | OG0002211 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -40.811 AMFE: -0.604 GC content %: 67.568 | |
| Pvirgatum_Pavir.3NG249000.5 Pavir.3NG249000.5 |
High | No | 1089 | OG0002211 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -34.151 AMFE: -0.637 GC content %: 53.627 | |
| Pvirgatum_Pavir.3NG249000.6 Pavir.3NG249000.6 |
High | No | 336 | OG0002211 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -40.536 AMFE: -0.600 GC content %: 67.560 | |
| Pvirgatum_Pavir.3NG249000.7 Pavir.3NG249000.7 |
High | No | 997 | OG0002211 | Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -33.972 AMFE: -0.627 GC content %: 54.162 | |
| Pvirgatum_Pavir.3NG249000.8 Pavir.3NG249000.8 |
High | No | 1093 | OG0002211 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -34.016 AMFE: -0.634 GC content %: 53.614 | |
| Pvirgatum_Pavir.3NG249000.9 Pavir.3NG249000.9 |
High | No | 1001 | OG0002211 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -33.826 AMFE: -0.625 GC content %: 54.146 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
