Pvirgatum Pavir.7NG132614
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Pvirgatum_Pavir.7NG132614 [ Pavir.7NG132614] |
Chr07N | 568464 | 570954 | v5.1 | Panicum virgatum (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Pvirgatum_Pavir.7NG132614.2 Pavir.7NG132614.2 |
High | No | 757 | OG0006377 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -35.073 AMFE: -0.640 GC content %: 54.822 | |
| Pvirgatum_Pavir.7NG132614.3 Pavir.7NG132614.3 |
High | No | 788 | OG0006377 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -33.985 AMFE: -0.626 GC content %: 54.315 | |
| Pvirgatum_Pavir.7NG132614.4 Pavir.7NG132614.4 |
High | No | 881 | OG0006377 | Get ORF Coding potential... Type: noncoding Potential: -1.270 Folding energies... MFEI: -34.211 AMFE: -0.640 GC content %: 53.462 | |
| Pvirgatum_Pavir.7NG132614.5 Pavir.7NG132614.5 |
High | No | 953 | OG0006377 | Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -33.452 AMFE: -0.643 GC content %: 52.046 | |
| Pvirgatum_Pavir.7NG132614.6 Pavir.7NG132614.6 |
High | No | 1087 | OG0006377 | Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -32.511 AMFE: -0.645 GC content %: 50.414 | |
| Pvirgatum_Pavir.7NG132614.7 Pavir.7NG132614.7 |
High | No | 673 | OG0281176 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -35.810 AMFE: -0.633 GC content %: 56.612 | |
| Pvirgatum_Pavir.7NG132614.8 Pavir.7NG132614.8 |
High | No | 837 | OG0006377 | Get ORF Coding potential... Type: noncoding Potential: -1.265 Folding energies... MFEI: -35.054 AMFE: -0.655 GC content %: 53.524 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
