Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Pvirgatum_Pavir.8KG131741 [ Pavir.8KG131741] |
Chr08K | 1419175 | 1422842 | v5.1 | Panicum virgatum (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Pvirgatum_Pavir.8KG131741.2 Pavir.8KG131741.2 |
High | No | 784 | OG0014284 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -30.599 AMFE: -0.680 GC content %: 45.026 | |
Pvirgatum_Pavir.8KG131741.3 Pavir.8KG131741.3 |
High | No | 297 | OG0014284 | Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -28.923 AMFE: -0.614 GC content %: 47.138 | |
Pvirgatum_Pavir.8KG131741.4 Pavir.8KG131741.4 |
High | No | 1015 | OG0014284 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -29.320 AMFE: -0.683 GC content %: 42.956 | |
Pvirgatum_Pavir.8KG131741.5 Pavir.8KG131741.5 |
High | No | 913 | OG0014284 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -29.430 AMFE: -0.684 GC content %: 43.045 |