GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Pvirgatum_Pavir.9KG294600 [ Pavir.9KG294600]	Chr09K	26950091	26952997	v5.1	Panicum virgatum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Pvirgatum_Pavir.9KG294600.1 Pavir.9KG294600.1	High	No	321	OG0021287		Get ORF Coding potential... Type: noncoding Potential: -0.655 Folding energies... MFEI: -27.944 AMFE: -0.594 GC content %: 47.040
Pvirgatum_Pavir.9KG294600.2 Pavir.9KG294600.2	High	No	264	OG0021287		Get ORF Coding potential... Type: noncoding Potential: -0.798 Folding energies... MFEI: -27.008 AMFE: -0.561 GC content %: 48.106
Pvirgatum_Pavir.9KG294600.3 Pavir.9KG294600.3	High	No	318	OG0021287		Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -27.327 AMFE: -0.583 GC content %: 46.855

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).