Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Qlobata_QL02p071264 [ QL02p071264] |
CM012294 | 71262536 | 71265454 | v3 | Quercus lobata (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Qlobata_QL02p071264:mrna QL02p071264:mrna |
Low | No | 1571 | [1] | Get ORF Coding potential... Type: noncoding Potential: -0.114 Folding energies... MFEI: -23.482 AMFE: -0.696 GC content %: 33.736 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Qlobata_QL02p071264:mrna | SwissProt | 2021-04-01 | Q9SF91 | 5.68e-12 |
Qlobata_QL02p071264:mrna | RepBase (RepeatMasker) | 2014-01-31 | DNA; DNA/CMC-EnSpm; DNA/hAT-Tip100; DNA/TcMar-Fot1; LINE/L1 |