Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Rchinensis_RchiOBHm_Chr3g0461151 [ RchiOBHm_Chr3g0461151] |
3 | 9225862 | 9226248 | v2 | Rosa chinensis (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Rchinensis_PRQ42759 PRQ42759 |
Low | Yes | 271 | OG0309829 | Get ORF Coding potential... Type: noncoding Potential: -0.451 Folding energies... MFEI: -18.007 AMFE: -0.508 GC content %: 35.424 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Rchinensis_PRQ42759 | Rfam | 14.6 | mir-598 | 0.0042 |
Rchinensis_PRQ42759 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |