Rchinensis RchiOBHm Chr3g0484411

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Rchinensis_RchiOBHm_Chr3g0484411
[ RchiOBHm_Chr3g0484411]
3 30785954 30786798 v2 Rosa chinensis (Ensembl Plants 51)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Rchinensis_PRQ44912
PRQ44912
Low No 633 OG0310142
Coding potential...
Type: noncoding Potential: -0.248
Folding energies...
MFEI: -24.344 AMFE: -0.595
GC content
%: 40.916


Matches to external databases
Help.png

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Rchinensis_PRQ44912  SwissProt 2021-04-01 Q8K2Y7 3.76e-11


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Rchinensis_RchiOBHm_Chr3g0484411.png