Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Rchinensis_RchiOBHm_Chr3g0496421 [ RchiOBHm_Chr3g0496421] |
3 | 47220145 | 47220762 | v2 | Rosa chinensis (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Rchinensis_PRQ45875 PRQ45875 |
Low | No | 215 | OG0310315 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -17.302 AMFE: -0.392 GC content %: 44.186 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Rchinensis_PRQ45875 | SwissProt | 2021-04-01 | Q8LFG1 | 3.36e-7 |
Rchinensis_PRQ45875 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Charlie |