Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Rchinensis_RchiOBHm_Chr4g0403621 [ RchiOBHm_Chr4g0403621] |
4 | 22992445 | 22997286 | v2 | Rosa chinensis (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Rchinensis_PRQ37533 PRQ37533 |
Low | No | 3407 | OG0009113 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -24.784 AMFE: -0.689 GC content %: 35.955 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Rchinensis_PRQ37533 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
Rchinensis_PRQ37533 | SwissProt | 2021-04-01 | Q69SP5 | 2.78e-4 |