Rchinensis RchiOBHm Chr6g0272961

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Rchinensis_RchiOBHm_Chr6g0272961
[ RchiOBHm_Chr6g0272961]
6 33460052 33468225 v2 Rosa chinensis (Ensembl Plants 51)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Rchinensis_EPlT00050201803
EPlT00050201803
Low No 370 OG0014367
Coding potential...
Type: noncoding Potential: -1.040
Folding energies...
MFEI: -35.243 AMFE: -0.607
GC content
%: 58.108


Matches to external databases
Help.png

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Rchinensis_EPlT00050201803  RepBase (RepeatMasker) 2014-01-31 LTR/Gypsy


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Rchinensis_RchiOBHm_Chr6g0272961.png