Rchinensis RchiOBHm Chr6g0273231

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Rchinensis_RchiOBHm_Chr6g0273231
[ RchiOBHm_Chr6g0273231]
6 33984580 33985012 v2 Rosa chinensis (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Rchinensis_PRQ24513
PRQ24513
Low No 347 OG0307187
Coding potential...
Type: noncoding Potential: -0.764
Folding energies...
MFEI: -25.072 AMFE: -0.685
GC content
%: 36.599


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Rchinensis_PRQ24513  SwissProt 2021-04-01 F4HW17 5.65e-8


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Rchinensis_RchiOBHm_Chr6g0273231.png