Sbicolor Sobic.001G022100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Sbicolor_Sobic.001G022100 [ Sobic.001G022100] |
Chr01 | 1802533 | 1805609 | v3.1.1 | Sorghum bicolor (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Sbicolor_Sobic.001G022100.1 Sobic.001G022100.1 |
High | No | 1848 | OG0339033 | Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -28.615 AMFE: -0.646 GC content %: 44.264 | |
| Sbicolor_Sobic.001G022100.2 Sobic.001G022100.2 |
High | No | 1236 | OG0339034 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -31.699 AMFE: -0.636 GC content %: 49.838 | |
| Sbicolor_Sobic.001G022100.3 Sobic.001G022100.3 |
High | No | 1023 | OG0339035 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -30.704 AMFE: -0.621 GC content %: 49.462 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
