Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Sbicolor_Sobic.002G156601 [ Sobic.002G156601] |
Chr02 | 47486418 | 47489656 | v3.1.1 | Sorghum bicolor (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Sbicolor_Sobic.002G156601.1 Sobic.002G156601.1 |
Low | No | 2501 | OG0014528 | Get ORF Coding potential... Type: noncoding Potential: -1.355 Folding energies... MFEI: -29.744 AMFE: -0.705 GC content %: 42.183 | |
Sbicolor_Sobic.002G156601.2 Sobic.002G156601.2 |
Low | No | 1439 | OG0014528 | Get ORF Coding potential... Type: noncoding Potential: -1.293 Folding energies... MFEI: -32.085 AMFE: -0.666 GC content %: 48.158 | |
Sbicolor_Sobic.002G156601.3 Sobic.002G156601.3 |
Low | No | 1636 | OG0014528 | Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -33.209 AMFE: -0.674 GC content %: 49.267 | |
Sbicolor_Sobic.002G156601.4 Sobic.002G156601.4 |
Low | No | 2440 | OG0014528 | Get ORF Coding potential... Type: noncoding Potential: -1.303 Folding energies... MFEI: -32.016 AMFE: -0.715 GC content %: 44.795 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Sbicolor_Sobic.002G156601.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Sbicolor_Sobic.002G156601.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Sbicolor_Sobic.002G156601.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Sbicolor_Sobic.002G156601.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |