GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Sbicolor_Sobic.006G275200 [ Sobic.006G275200]	Chr06	60639124	60642139	v3.1.1	Sorghum bicolor (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Sbicolor_Sobic.006G275200.1 Sobic.006G275200.1	High	No	723	OG0021994		Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -34.219 AMFE: -0.612 GC content %: 55.878
Sbicolor_Sobic.006G275200.2 Sobic.006G275200.2	High	No	853	OG0021994		Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -33.060 AMFE: -0.623 GC content %: 53.107
Sbicolor_Sobic.006G275200.3 Sobic.006G275200.3	High	No	765	OG0021994		Get ORF Coding potential... Type: noncoding Potential: -0.914 Folding energies... MFEI: -33.895 AMFE: -0.625 GC content %: 54.248

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).