Sbicolor Sobic.009G092800

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Sbicolor_Sobic.009G092800
[ Sobic.009G092800]
Chr09 22108436 22110236 v3.1.1 Sorghum bicolor (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Sbicolor_Sobic.009G092800.1
Sobic.009G092800.1
High No 678 OG0004407
Coding potential...
Type: noncoding Potential: -1.236
Folding energies...
MFEI: -27.891 AMFE: -0.555
GC content
%: 50.295
Sbicolor_Sobic.009G092800.2
Sobic.009G092800.2
High No 1405 OG0004407
Coding potential...
Type: noncoding Potential: -1.200
Folding energies...
MFEI: -24.548 AMFE: -0.597
GC content
%: 41.139
Sbicolor_Sobic.009G092800.3
Sobic.009G092800.3
High No 1291 OG0004407
Coding potential...
Type: noncoding Potential: -1.281
Folding energies...
MFEI: -24.260 AMFE: -0.598
GC content
%: 40.589
Sbicolor_Sobic.009G092800.4
Sobic.009G092800.4
High No 551 OG0004407
Coding potential...
Type: noncoding Potential: -1.152
Folding energies...
MFEI: -27.260 AMFE: -0.527
GC content
%: 51.724


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Sbicolor_Sobic.009G092800.png