GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Sbicolor_Sobic.009G092800 [ Sobic.009G092800]	Chr09	22108436	22110236	v3.1.1	Sorghum bicolor (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Sbicolor_Sobic.009G092800.1 Sobic.009G092800.1	High	No	678	OG0004407		Get ORF Coding potential... Type: noncoding Potential: -1.236 Folding energies... MFEI: -27.891 AMFE: -0.555 GC content %: 50.295
Sbicolor_Sobic.009G092800.2 Sobic.009G092800.2	High	No	1405	OG0004407		Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -24.548 AMFE: -0.597 GC content %: 41.139
Sbicolor_Sobic.009G092800.3 Sobic.009G092800.3	High	No	1291	OG0004407		Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -24.260 AMFE: -0.598 GC content %: 40.589
Sbicolor_Sobic.009G092800.4 Sobic.009G092800.4	High	No	551	OG0004407		Get ORF Coding potential... Type: noncoding Potential: -1.152 Folding energies... MFEI: -27.260 AMFE: -0.527 GC content %: 51.724

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).