Spurpurea SapurV1A.0001s0240

From GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

[ SapurV1A.0001s0240]
chr06 7420239 7422627 v1 Salix purpurea (Phytozome 13)

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Low No 858 OG0319003
Coding potential...
Type: noncoding Potential: -0.527
Folding energies...
MFEI: -26.131 AMFE: -0.642
GC content
%: 40.676

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Spurpurea_SapurV1A.0001s0240.1  RepBase (RepeatMasker) 2014-01-31 LTR/Gypsy
Spurpurea_SapurV1A.0001s0240.1  SwissProt 2021-04-01 P81748 1.84e-10

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).