Spurpurea SapurV1A.0001s0470

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Spurpurea_SapurV1A.0001s0470
[ SapurV1A.0001s0470]
chr06 7255227 7257768 v1 Salix purpurea (Phytozome 13)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Spurpurea_SapurV1A.0001s0470.1
SapurV1A.0001s0470.1
High No 944 OG0021691
Coding potential...
Type: noncoding Potential: -0.655
Folding energies...
MFEI: -25.000 AMFE: -0.663
GC content
%: 37.712
Spurpurea_SapurV1A.0001s0470.2
SapurV1A.0001s0470.2
High No 668 OG0021691
Coding potential...
Type: noncoding Potential: -0.579
Folding energies...
MFEI: -25.719 AMFE: -0.634
GC content
%: 40.569
Spurpurea_SapurV1A.0001s0470.3
SapurV1A.0001s0470.3
High No 914 OG0021691
Coding potential...
Type: noncoding Potential: -0.851
Folding energies...
MFEI: -24.606 AMFE: -0.654
GC content
%: 37.637


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Spurpurea_SapurV1A.0001s0470.png