Spurpurea SapurV1A.0001s1840

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Spurpurea_SapurV1A.0001s1840
[ SapurV1A.0001s1840]
chr06 6236776 6237879 v1 Salix purpurea (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Spurpurea_SapurV1A.0001s1840.1
SapurV1A.0001s1840.1
Low No 1016 OG0319011
Coding potential...
Type: noncoding Potential: -0.067
Folding energies...
MFEI: -28.396 AMFE: -0.689
GC content
%: 41.240


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Spurpurea_SapurV1A.0001s1840.1  SwissProt 2021-04-01 P43390 3.66e-18


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Spurpurea_SapurV1A.0001s1840.png