Spurpurea SapurV1A.0001s1960

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Spurpurea_SapurV1A.0001s1960
[ SapurV1A.0001s1960]
chr06 6156609 6156959 v1 Salix purpurea (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Spurpurea_SapurV1A.0001s1960.1
SapurV1A.0001s1960.1
High No 351 OG0319012
Coding potential...
Type: noncoding Potential: -0.763
Folding energies...
MFEI: -33.362 AMFE: -0.588
GC content
%: 56.695


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Spurpurea_SapurV1A.0001s1960.png